Remove filetime assertions from patch tool

Improvements

• CoreEnsure truncation handling applies to MCP servers
• CoreUpdate batch tool definition to outline correct value for max tool calls@jamesmengo
• TerminalAdd space toggle hint to tool selection prompt@cjellick
• TerminalFix message history cleanup to prevent memory leaks in TUI
• DesktopFixed flash of home page on application start
• DesktopFixed localStorage quota handling in app
• DesktopPersist quota limits to prevent loss on reload
• DesktopCompletely disable pinch to zoom in desktop application@Brendonovich
• DesktopFix message list overflow and scrolling issues@neriousy
• DesktopAdd 8px padding to recent sessions popover
• DesktopRemove top padding from edit project dialog form
• DesktopUpdate session messages popover gutter to 28px
• DesktopPosition session messages popover at top
• DesktopRetain session hover state when popover is open and update border radius
• DesktopUpdate session hover popover styling
• DesktopUpdate review session empty state styling
• DesktopAdd ability to select project directory text in web interface@DNGriffin